Arguments Listing
Fetch
PubmedSOAPFetch
**emailAddress (-m | --email)
**location (-l | --location)
**outputRecordHandler (-o | --output)
- searchTerm (-t | --termSearch)
- default - all records
- numRecords (-n | --numRecords)
- default - all records
- batchSize (-b | --batchSize)
- default - 1000
OAIFetch
**repositoryURL (-u | --url)
**outputRecordHandler (-o | --output)
**rangeStartDate (-s --start)
-
- default - yr1
- rangeEndDate (-e --end)
- default - yr8000
JDBCFetch
**jdbcDriverClass (-d | --driver)
**jdbcConnLine (-c | --connection)
**dbUser (-u | --user)
**dbPass (-p | --password)
**outputRecordHandler (-o | --output)
- Table Data
- (how to compress this?)
Qualify
SPARQLQualify
- model (-j | --jenaConfig)
- dataType (-d | --dataType)
- matchRegex (-r | --regexMatch)
- matchExact (-t | --textMatch)
- newValue (-v | --value)
Score
Score
i rdfRecordHandler rdfRecordHandler config filename
V vivoJenaConfig vivoJenaConfig config filename
T tempModelConfig tempModelConfig config filename
O outputModelConfig outputModelConfig config filename
e exactMatch perform an exact match scoring
p pairWise perform a pairwise scoring
a authorName perform a author name scoring
p create-authors create people from ingested publications
d dateFilter add a date filter threshold that will only match year XXXX or greater
r regex perform a regular expression scoring
t tempModel temporary working model name
o outputModel output model name
f force-process If set, this will reprocess all RDF – even if it's been processed before
n allow-non-empty-working-model If set, this will not clear the working model before scoring begins
k keep-working-model If set, this will not clear the working model after scoring is complete
Transfer
Transfer
- i input config file for input jena model
- o output config file for output jena model
- I input model name for input (overrides config file)
- O output model name for output (overrides config file)
- d dumptofile dump file
- k keep-transfered-model If set, this will not clear the input model after transfer is complete
Translate
BebtexTranslator
- a
GlozeTranslator
**inputRecordHandler (-i | --input)
**outputRecordHandler (-o | --output)
- schema (-z | --xmlSchema)
- default - null
- uriBase (-u | --uriBase)
RDFTranslator
- a
VCardTranslator
- a
XSLTranslator
**inputRecordHandler (-i | --input)
**outputRecordHandler (-o | --output)
**xslFile (-x | --xslFile)
- - Denotes Required Argument
