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Comment: Bitstream explanation and supported file types

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The Duraspace community fosters a close relation with Google to ensure optimal indexing of DSpace content, primarily in the Google Search and Google Scholar products. For the purpose of Google Scholar indexing, DSpace added specific metadata in the page head tags facilitating indexing in Scholar. More information can be retrieved on the Google Scholar Metadata Mappings page. Popular DSpace repositories often generate over 60% of their visits from Google pages.

System Design

Data Model

Image Removed

Data Model Diagram

The way data is organized in DSpace is intended to reflect the structure of the organization using the DSpace system. Each DSpace site is divided into communities, which can be further divided into sub-communities reflecting the typical university structure of college, department, research center, or laboratory.

Communities contain collections, which are groupings of related content. A collection may appear in more than one community.

Each collection is composed of items, which are the basic archival elements of the archive. Each item is owned by one collection. Additionally, an item may appear in additional collections; however every item has one and only one owning collection.

Items are further subdivided into named bundles of bitstreams. Bitstreams are, as the name suggests, streams of bits, usually ordinary computer files. Bitstreams that are somehow closely related, for example HTML files and images that compose a single HTML document, are organized into bundles.

In practice, most items tend to have these named bundles:

  • ORIGINAL – the bundle with the original, deposited bitstreams
  • THUMBNAILS – thumbnails of any image bitstreams
  • TEXT – extracted full-text from bitstreams in ORIGINAL, for indexing
  • LICENSE – contains the deposit license that the submitter granted the host organization; in other words, specifies the rights that the hosting organization have
  • CC_LICENSE – contains the distribution license, if any (a Creative Commons license) associated with the item. This license specifies what end users downloading the content can do with the content

Each bitstream is associated with one Bitstream Format. Because preservation services may be an important aspect of the DSpace service, it is important to capture the specific formats of files that users submit. In DSpace, a bitstream format is a unique and consistent way to refer to a particular file format. An integral part of a bitstream format is an either implicit or explicit notion of how material in that format can be interpreted. For example, the interpretation for bitstreams encoded in the JPEG standard for still image compression is defined explicitly in the Standard ISO/IEC 10918-1. The interpretation of bitstreams in Microsoft Word 2000 format is defined implicitly, through reference to the Microsoft Word 2000 application. Bitstream formats can be more specific than MIME types or file suffixes. For example, application/ms-word and .doc span multiple versions of the Microsoft Word application, each of which produces bitstreams with presumably different characteristics.

Each bitstream format additionally has a support level, indicating how well the hosting institution is likely to be able to preserve content in the format in the future. There are three possible support levels that bitstream formats may be assigned by the hosting institution. The host institution should determine the exact meaning of each support level, after careful consideration of costs and requirements. MIT Libraries' interpretation is shown below:

Supported

The format is recognized, and the hosting institution is confident it can make bitstreams of this format usable in the future, using whatever combination of techniques (such as migration, emulation, etc.) is appropriate given the context of need.

Known

The format is recognized, and the hosting institution will promise to preserve the bitstream as-is, and allow it to be retrieved. The hosting institution will attempt to obtain enough information to enable the format to be upgraded to the 'supported' level.

Unsupported

The format is unrecognized, but the hosting institution will undertake to preserve the bitstream as-is and allow it to be retrieved.

Each item has one qualified Dublin Core metadata record. Other metadata might be stored in an item as a serialized bitstream, but we store Dublin Core for every item for interoperability and ease of discovery. The Dublin Core may be entered by end-users as they submit content, or it might be derived from other metadata as part of an ingest process.

Items can be removed from DSpace in one of two ways: They may be 'withdrawn', which means they remain in the archive but are completely hidden from view. In this case, if an end-user attempts to access the withdrawn item, they are presented with a 'tombstone,' that indicates the item has been removed. For whatever reason, an item may also be 'expunged' if necessary, in which case all traces of it are removed from the archive.

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Object

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Example

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Community

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Laboratory of Computer Science; Oceanographic Research Center

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Collection

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LCS Technical Reports; ORC Statistical Data Sets

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Item

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A technical report; a data set with accompanying description; a video recording of a lecture

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Bundle

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A group of HTML and image bitstreams making up an HTML document

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Bitstream

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A single HTML file; a single image file; a source code file

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Bitstream Format

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OpenURL Support

DSpace supports the OpenURL protocol from SFX, in a rather simple fashion. If your institution has an SFX server, DSpace will display an OpenURL link on every item page, automatically using the Dublin Core metadata. Additionally, DSpace can respond to incoming OpenURLs. Presently it simply passes the information in the OpenURL to the search subsystem. A list of results is then displayed, which usually gives the relevant item (if it is in DSpace) at the top of the list.

Supported file types

DSpace can accommodate any type of uploaded file. While DSpace is most known for hosting text based materials including scholarly communication and electronic theses and dissertations (ETDs), there are many stakeholders in the community who use DSpace for multimedia, data and learning objects.

Files that have been uploaded to DSpace are often referred to as "Bitstreams". The reason for this is mainly historic and tracks back to the technical implementation. After ingestion, fles in DSpace are stored on the file system as a stream of bits without the file extension.

Support for HTML Archives

For the most part, at present DSpace simply supports uploading and downloading of bitstreams as-is. This is fine for the majority of commonly-used file formats – for example PDFs, Microsoft Word documents, spreadsheets and so forth. HTML documents (Web sites and Web pages) are far more complicated, and this has important ramifications when it comes to digital preservation:

  • Web pages tend to consist of several files – one or more HTML files that contain references to each other, and stylesheets and image files that are referenced by the HTML files.
  • Web pages also link to or include content from other sites, often imperceptibly to the end-user. Thus, in a few year's time, when someone views the preserved Web site, they will probably find that many links are now broken or refer to other sites than are now out of context.In fact, it may be unclear to an end-user when they are viewing content stored in DSpace and when they are seeing content included from another site, or have navigated to a page that is not stored in DSpace. This problem can manifest when a submitter uploads some HTML content. For example, the HTML document may include an image from an external Web site, or even their local hard drive. When the submitter views the HTML in DSpace, their browser is able to use the reference in the HTML to retrieve the appropriate image, and so to the submitter, the whole HTML document appears to have been deposited correctly. However, later on, when another user tries to view that HTML, their browser might not be able to retrieve the included image since it may have been removed from the external server. Hence the HTML will seem broken.
  • Often Web pages are produced dynamically by software running on the Web server, and represent the state of a changing database underneath it.
    Dealing with these issues is the topic of much active research. Currently, DSpace bites off a small, tractable chunk of this problem. DSpace can store and provide on-line browsing capability for self-contained, non-dynamic HTML documents. In practical terms, this means:
  • No dynamic content (CGI scripts and so forth)
  • All links to preserved content must be relative links, that do not refer to 'parents' above the 'root' of the HTML document/site:
    • diagram.gif is OK
    • image/foo.gif is OK
    • ../index.html is only OK in a file that is at least a directory deep in the HTML document/site hierarchy
    • /stylesheet.css is not OK (the link will break)
    • http://somedomain.com/content.html is not OK (the link will continue to link to the external site which may change or disappear)
  • Any 'absolute links' (e.g. http://somedomain.com/content.html) are stored 'as is', and will continue to link to the external content (as opposed to relative links, which will link to the copy of the content stored in DSpace.) Thus, over time, the content referred to by the absolute link may change or disappear.

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Metadata Management

Metadata

Broadly speaking, DSpace holds three sorts of metadata about archived content:

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If a submission is rejected, the reason (entered by the workflow participant) is e-mailed to the submitter, and it is returned to the submitter's 'My DSpace' page. The submitter can then make any necessary modifications and re-submit, whereupon the process starts again.

If a submission is 'accepted', it is passed to the next step in the workflow. If there are no more workflow steps with associated groups, the submission is installed in the main archive.

One last possibility is that a workflow can be 'aborted' by a DSpace site administrator. This is accomplished using the administration UI.

The reason for this apparently arbitrary design is that is was the simplest case that covered the needs of the early adopter communities at MIT. The functionality of the workflow system will no doubt be extended in the future.

Command line import facilities

DSpace includes batch tools to import items in a simple directory structure, where the Dublin Core metadata is stored in an XML file. This may be used as the basis for moving content between DSpace and other systems. For more information see Item Importer and Exporter.

submitter can then make any necessary modifications and re-submit, whereupon the process starts again.

If a submission is 'accepted', it is passed to the next step in the workflow. If there are no more workflow steps with associated groups, the submission is installed in the main archive.

One last possibility is that a workflow can be 'aborted' by a DSpace site administrator. This is accomplished using the administration UI.

The reason for this apparently arbitrary design is that is was the simplest case that covered the needs of the early adopter communities at MIT. The functionality of the workflow system will no doubt be extended in the future.

Command line import facilities

DSpace includes batch tools to import items in a simple directory structure, where the Dublin Core metadata is stored in an XML file. This may be used as the basis for moving content between DSpace and other systems. For more information see Item Importer and Exporter.

DSpace also includes various package importer tools, which support many common content packaging formats like METS. For more information see Package Importer and Exporter.

Registration for externally hosted files

Registration is an alternate means of incorporating items, their metadata, and their bitstreams into DSpace by taking advantage of the bitstreams already being in accessible computer storage. An example might be that there is a repository for existing digital assets. Rather than using the normal interactive ingest process or the batch import to furnish DSpace the metadata and to upload bitstreams, registration provides DSpace the metadata and the location of the bitstreams. DSpace uses a variation of the import tool to accomplish registrationDSpace also includes various package importer tools, which support many common content packaging formats like METS. For more information see Package Importer and Exporter.

Getting content out of DSpace

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The purpose of the checker is to verify that the content in a DSpace repository has not become corrupted or been tampered with. The functionality can be invoked on an ad-hoc basis from the command line, or configured via cron or similar. Options exist to support large repositories that cannot be entirely checked in one run of the tool. The tool is to verify that the content in a DSpace repository has not become corrupted or been tampered with. The functionality can be invoked on an ad-hoc basis from the command line, or configured via cron or similar. Options exist to support large repositories that cannot be entirely checked in one run of the tool. The tool is extensible to new reporting and checking priority approaches.

To be categorized

Storage Resource Broker (SRB) Support

DSpace offers two means for storing bitstreams. The first is in the file system on the server. The second is using SRB (Storage Resource Broker). Both are achieved using a simple, lightweight API.

SRB is purely an option but may be used in lieu of the server's file system or in addition to the file system. Without going into a full description, SRB is a very robust, sophisticated storage manager that offers essentially unlimited storage and straightforward means to replicate (in simple terms, backup) the content on other local or remote storage resources.

HTML Support

For the most part, at present DSpace simply supports uploading and downloading of bitstreams as-is. This is fine for the majority of commonly-used file formats – for example PDFs, Microsoft Word documents, spreadsheets and so forth. HTML documents (Web sites and Web pages) are far more complicated, and this has important ramifications when it comes to digital preservation:

  • Web pages tend to consist of several files – one or more HTML files that contain references to each other, and stylesheets and image files that are referenced by the HTML files.
  • Web pages also link to or include content from other sites, often imperceptibly to the end-user. Thus, in a few year's time, when someone views the preserved Web site, they will probably find that many links are now broken or refer to other sites than are now out of context.In fact, it may be unclear to an end-user when they are viewing content stored in DSpace and when they are seeing content included from another site, or have navigated to a page that is not stored in DSpace. This problem can manifest when a submitter uploads some HTML content. For example, the HTML document may include an image from an external Web site, or even their local hard drive. When the submitter views the HTML in DSpace, their browser is able to use the reference in the HTML to retrieve the appropriate image, and so to the submitter, the whole HTML document appears to have been deposited correctly. However, later on, when another user tries to view that HTML, their browser might not be able to retrieve the included image since it may have been removed from the external server. Hence the HTML will seem broken.
  • Often Web pages are produced dynamically by software running on the Web server, and represent the state of a changing database underneath it.
    Dealing with these issues is the topic of much active research. Currently, DSpace bites off a small, tractable chunk of this problem. DSpace can store and provide on-line browsing capability for self-contained, non-dynamic HTML documents. In practical terms, this means:
  • No dynamic content (CGI scripts and so forth)
  • All links to preserved content must be relative links, that do not refer to 'parents' above the 'root' of the HTML document/site:
    • diagram.gif is OK
    • image/foo.gif is OK
    • ../index.html is only OK in a file that is at least a directory deep in the HTML document/site hierarchy
    • /stylesheet.css is not OK (the link will break)
    • http://somedomain.com/content.html is not OK (the link will continue to link to the external site which may change or disappear)
  • Any 'absolute links' (e.g. http://somedomain.com/content.html) are stored 'as is', and will continue to link to the external content (as opposed to relative links, which will link to the copy of the content stored in DSpace.) Thus, over time, the content referred to by the absolute link may change or disappear.

OpenURL Support

DSpace supports the OpenURL protocol from SFX, in a rather simple fashion. If your institution has an SFX server, DSpace will display an OpenURL link on every item page, automatically using the Dublin Core metadata. Additionally, DSpace can respond to incoming OpenURLs. Presently it simply passes the information in the OpenURL to the search subsystem. A list of results is then displayed, which usually gives the relevant item (if it is in DSpace) at the top of the list.

Creative Commons Support

DSpace provides support for Creative Commons licenses to be attached to items in the repository. They represent an alternative to traditional copyright. To learn more about Creative Commons, visit their website. Support for license selection is controlled by a site-wide configuration option, and since license selection involves interaction with the Creative Commons website, additional parameters may be configured to work with a proxy server. If the option is enabled, users may select a Creative Commons license during the submission process, or elect to skip Creative Commons licensing. If a selection is made, metadata and (optionally) a copy of the license text is stored along with the item in the repository. There is also an indication - text and a Creative Commons icon - in the item display page of the web user interface when an item is licensed under Creative Commons. For specifics of how to configure and use Creative Commons licenses, see the configuration section.

Subscriptions

As noted above, end-users (e-people) may 'subscribe' to collections in order to be alerted when new items appear in those collections. Each day, end-users who are subscribed to one or more collections will receive an e-mail giving brief details of all new items that appeared in any of those collections the previous day. If no new items appeared in any of the subscribed collections, no e-mail is sent. Users can unsubscribe themselves at any time. RSS feeds of new items are also available for collections and communities.

Registration

Registration is an alternate means of incorporating items, their metadata, and their bitstreams into DSpace by taking advantage of the bitstreams already being in accessible computer storage. An example might be that there is a repository for existing digital assets. Rather than using the normal interactive ingest process or the batch import to furnish DSpace the metadata and to upload bitstreams, registration provides DSpace the metadata and the location of the bitstreams. DSpace uses a variation of the import tool to accomplish registration.

extensible to new reporting and checking priority approaches.

To be categorized

Storage Resource Broker (SRB) Support

DSpace offers two means for storing bitstreams. The first is in the file system on the server. The second is using SRB (Storage Resource Broker). Both are achieved using a simple, lightweight API.

SRB is purely an option but may be used in lieu of the server's file system or in addition to the file system. Without going into a full description, SRB is a very robust, sophisticated storage manager that offers essentially unlimited storage and straightforward means to replicate (in simple terms, backup) the content on other local or remote storage resources.

Creative Commons Support

DSpace provides support for Creative Commons licenses to be attached to items in the repository. They represent an alternative to traditional copyright. To learn more about Creative Commons, visit their website. Support for license selection is controlled by a site-wide configuration option, and since license selection involves interaction with the Creative Commons website, additional parameters may be configured to work with a proxy server. If the option is enabled, users may select a Creative Commons license during the submission process, or elect to skip Creative Commons licensing. If a selection is made, metadata and (optionally) a copy of the license text is stored along with the item in the repository. There is also an indication - text and a Creative Commons icon - in the item display page of the web user interface when an item is licensed under Creative Commons. For specifics of how to configure and use Creative Commons licenses, see the configuration section.

Subscriptions

As noted above, end-users (e-people) may 'subscribe' to collections in order to be alerted when new items appear in those collections. Each day, end-users who are subscribed to one or more collections will receive an e-mail giving brief details of all new items that appeared in any of those collections the previous day. If no new items appeared in any of the subscribed collections, no e-mail is sent. Users can unsubscribe themselves at any time. RSS feeds of new items are also available for collections and communities.

System Design

Data Model

Image Added

Data Model Diagram

The way data is organized in DSpace is intended to reflect the structure of the organization using the DSpace system. Each DSpace site is divided into communities, which can be further divided into sub-communities reflecting the typical university structure of college, department, research center, or laboratory.

Communities contain collections, which are groupings of related content. A collection may appear in more than one community.

Each collection is composed of items, which are the basic archival elements of the archive. Each item is owned by one collection. Additionally, an item may appear in additional collections; however every item has one and only one owning collection.

Items are further subdivided into named bundles of bitstreams. Bitstreams are, as the name suggests, streams of bits, usually ordinary computer files. Bitstreams that are somehow closely related, for example HTML files and images that compose a single HTML document, are organized into bundles.

In practice, most items tend to have these named bundles:

  • ORIGINAL – the bundle with the original, deposited bitstreams
  • THUMBNAILS – thumbnails of any image bitstreams
  • TEXT – extracted full-text from bitstreams in ORIGINAL, for indexing
  • LICENSE – contains the deposit license that the submitter granted the host organization; in other words, specifies the rights that the hosting organization have
  • CC_LICENSE – contains the distribution license, if any (a Creative Commons license) associated with the item. This license specifies what end users downloading the content can do with the content

Each bitstream is associated with one Bitstream Format. Because preservation services may be an important aspect of the DSpace service, it is important to capture the specific formats of files that users submit. In DSpace, a bitstream format is a unique and consistent way to refer to a particular file format. An integral part of a bitstream format is an either implicit or explicit notion of how material in that format can be interpreted. For example, the interpretation for bitstreams encoded in the JPEG standard for still image compression is defined explicitly in the Standard ISO/IEC 10918-1. The interpretation of bitstreams in Microsoft Word 2000 format is defined implicitly, through reference to the Microsoft Word 2000 application. Bitstream formats can be more specific than MIME types or file suffixes. For example, application/ms-word and .doc span multiple versions of the Microsoft Word application, each of which produces bitstreams with presumably different characteristics.

Each bitstream format additionally has a support level, indicating how well the hosting institution is likely to be able to preserve content in the format in the future. There are three possible support levels that bitstream formats may be assigned by the hosting institution. The host institution should determine the exact meaning of each support level, after careful consideration of costs and requirements. MIT Libraries' interpretation is shown below:

Supported

The format is recognized, and the hosting institution is confident it can make bitstreams of this format usable in the future, using whatever combination of techniques (such as migration, emulation, etc.) is appropriate given the context of need.

Known

The format is recognized, and the hosting institution will promise to preserve the bitstream as-is, and allow it to be retrieved. The hosting institution will attempt to obtain enough information to enable the format to be upgraded to the 'supported' level.

Unsupported

The format is unrecognized, but the hosting institution will undertake to preserve the bitstream as-is and allow it to be retrieved.

Each item has one qualified Dublin Core metadata record. Other metadata might be stored in an item as a serialized bitstream, but we store Dublin Core for every item for interoperability and ease of discovery. The Dublin Core may be entered by end-users as they submit content, or it might be derived from other metadata as part of an ingest process.

Items can be removed from DSpace in one of two ways: They may be 'withdrawn', which means they remain in the archive but are completely hidden from view. In this case, if an end-user attempts to access the withdrawn item, they are presented with a 'tombstone,' that indicates the item has been removed. For whatever reason, an item may also be 'expunged' if necessary, in which case all traces of it are removed from the archive.

Object

Example

Community

Laboratory of Computer Science; Oceanographic Research Center

Collection

LCS Technical Reports; ORC Statistical Data Sets

Item

A technical report; a data set with accompanying description; a video recording of a lecture

Bundle

A group of HTML and image bitstreams making up an HTML document

Bitstream

A single HTML file; a single image file; a source code file

Bitstream Format

Microsoft Word version 6.0; JPEG encoded image format

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