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Jon Corson-Rikert will be leading this week's call.
VIVO 1.5.1
VIVO 1.5.1 was released Monday, October 15. Many thanks to all who contributed through bug reporting, development, and testing.
Updates
- Brown
- Colorado
- Cornell
- Duke
- EPA
- Florida
- Indiana
- NYU
- Penn
- UCSF
- Weill - identified orphan dateTimeValue and problematic special characters.
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This is the only place in the harvest where Jenna is being asked to
read from a file. All the other places are via a RecordHandler or a
TDB.
CV parsing at Brown
Ted Lawless from Brown will discuss the procedures they have in place for parsing the standard format CVs that have been required of faculty at Brown, including what the vendor (Backstage) does and the workflow for cleanup, mapping, and loading the resulting data into VIVO.
Moving to Git/GitHub, Converting the Wiki
Jon CR and Jim Blake met Wednesday 10/24 with Jonathan Markow and Bill Branon of DuraSpace to plan migration of this wiki (Mediawiki on SourceForge) to Confluence hosted on DuraSpace. DuraSpace will be setting up a server for testing the migration and weeding out of content that may be out of date and not reflect current VIVO or Harvester or ontology capabilities or interfaces. While Confluence supports a more hierarchical view of content than Mediawiki, it also supports tagging pages as well as full-text search of their content.
If SourceForge decides not to discontinue support for hosted apps like Mediawiki, the current wiki will still have value for some time as a record of the activities of the NIH-funded VIVO project, but moving to DuraSpace is an opportunity to re-focus the content on the community vs. grant-driven model of development and support.
Another option used by other DuraSpace projects is to maintain a documentation wiki 'trunk' that can be copied into a separate wiki as of each major release to serve as a stable repository of documentation current at the time of release.
DuraSpace has also established two Jira spaces at jira.duraspace.org. They do not support anonymous editing or issue creation in Confluence or Jira, but anyone may create an account in Confluence and accounts are shared between the two systems. We will establish VIVO user groups within Confluence and Jira to maintain consistent permissions.
Notable Development List Traffic
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Custom uri's --'http://vivo.university.edu/individual/2000/01/01 is not in a legal default namespace, so a direct request for it will result in a not found error. An example of a URI that should work fine is http://vivo.university.edu/individual/date-2000-01-01 . Here, there are no non-name characters following the "/individual/", and the local name does not begin with a digit. |
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You could easily persist these changes to a file by creating annotations to the ontologies. |
Call-in Information
Topic: VIVO weekly developer call
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Meeting Number: 645 873 290
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