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Obsolete: This page was written for VIVO 1.1 - it is no longer correct.

We will attempt to revise this page to work with newer releases. In the meantime, please check the current installation instructions: VIVO Installation Instructions

nano /etc/apt/sources.list

apt-get update apt-get install apache2 sun-java6-jdk sun-java6-jre libtcnative-1 sudo

java -version

nano ~/.bashrc

export JAVA_HOME=/usr/lib/jvm/java-6-sun export CLASSPATH=$CLASSPATH:/usr/share/java/mysql-connector-java-5.1.6.jar export CLASSPATH=$CLASSPATH:/usr/share/java/mysql-connector-java.jar

wget http://people.apache.org/~remm/tomcat-6/v6.0.20/bin/apache-tomcat-6.0.20.tar.gz tar -zxvf apache-tomcat.....tar.gz mv apache-tomcat-6.0.20/ /usr/local/tomcat

groupadd tomcat useradd -g tomcat -d /usr/local/tomcat tomcat usermod -G www-data tomcat

passwd tomcat VIVO123

nano /etc/init.d/tomcat # Tomcat auto-start description: Auto-starts tomcat processname: tomcat pidfile: /var/run/tomcat.pid export JAVA_HOME=/usr/lib/jvm/java-6-sun case $1 in start) sh /usr/local/tomcat/bin/startup.sh ;; stop) sh /usr/local/tomcat/bin/shutdown.sh ;; restart) sh /usr/local/tomcat/bin/shutdown.sh sh /usr/local/tomcat/bin/startup.sh ;; esac exit 0

chmod 755 /etc/init.d/tomcat

update-rc.d tomcat defaults

nano /usr/local/tomcat/conf/tomcat-users.xml <tomcat-users> <role rolename="manager"/> <role rolename="admin"/> <user username="VIVO" password="VIVO123" roles="admin,manager"/> </tomcat-users>

/etc/init.d/apache2 stop /etc/init.d/tomcat restart /etc/iinit.d/apache2 start

http://localhost:8080/manager/html/list

Username: VIVO Password: VIVO123

useradd vitro passwd vitro

vitro123

nano /etc/sudoers

root,vitro ALL=(ALL) ALL

/etc/init.d/tomcat stop

apt-get update apt-get install subversion-tools sudo ant mysql-server-5.0 libmysql-java

vitro123

cd /tmp wget https://downloads.sourceforge.net/project/vivo/VIVO%20Application%20Source/rel-1.1.tar.gz tar -zxvf rel-1.1.tar.gz

mv vivo-rel-1.1 /usr/local/vivo

cd /usr/local/vivo mv example.deploy.properties deploy.properties nano deploy.properties VIVO.defaultNamespace=http://localhost/vivo/ VIVOConnection.DataSource.url=jdbc:mysql://localhost/VIVOdb VIVOConnection.DataSource.username=VIVO VIVOConnection.DataSource.password=VIVO123

mkdir /usr/local/vivo/data mkdir /usr/local/vivo/data/uploads mkdir /usr/local/vivo/data/luceneIndex chown tomcat:www-data /usr/local/vivo/data/uploads chmod 775 /usr/local/vivo/data/uploads chown tomcat:www-data /usr/local/vivo/data/luceneIndex chmod 775 /usr/local/vivo/data/luceneIndex

cd /usr/local/vivo/vitro-core/config mv example.globalbuild.properties globalbuild.properties nano globalbuild.properties java_api=/usr/lib/jvm/java-6-sun

mkdir /usr/local/src/Vitro chown tomcat:www-data /usr/local/src/Vitro chmod 775 /usr/local/src/Vitro

mysql -u root -p CREATE DATABASE vitrodb CHARACTER SET utf8; CREATE USER 'VIVO'@'localhost' IDENTIFIED BY 'vitro123'; GRANT ALL ON *.* TO 'VIVO'@'localhost'; quit;

/etc/init.d/tomcat stop cd /usr/local/vivo ant all

/etc/init.d/tomcat start

http://localhost:8080/vivo

a2enmod proxy a2enmod proxy_http

nano /usr/local/tomcat/conf/server.xml

<!-- Set context path for access to 8080 over port 80 --> <Connector port="8080" maxHttpHeaderSize="8192" maxThreads="150" minSpareThreads="25" maxSpareThreads="75" enableLookups="false" redirectPort="8443" acceptCount="100" connectionTimeout="10000" disableUploadTimeout="true" proxyName="YOUR.DOMAIN.EDU" proxyPort="80"/> <!-- Set context path for access over SSL --> <Connector port="8443" maxHttpHeaderSize="8192" maxThreads="150" minSpareThreads="25" maxSpareThreads="75" enableLookups="false" disableUploadTimeout="true" acceptCount="100" scheme="https" secure="true" clientAuth="false" sslProtocol="TLS" proxyName="YOUR.DOMAIN.EDU" proxyPort="443" /> <!-- Set docBase for root webserver application --> <Host name="localhost" appBase="webapps/vivo"> <Context path="" docBase="." /> </Host>

nano /etc/apache2/sites-available/default ProxyRequests On ProxyPreserveHost On ProxyStatus On <Proxy *> Order deny,allow Allow from all </Proxy> # Use proxy to restrict the need for a port in the URL ProxyPass /vivo/ http://localhost:8080/vivo/ ProxyPassReverse /vivo/ http://localhost:8080/vivo/ ProxyPass / http://localhost/vivo/ ProxyPassReverse / http://localhost/vivo/

nano /etc/apache2/sites-available/default-ssl

ProxyRequests On ProxyPreserveHost On ProxyStatus On <Proxy *> Order deny,allow Allow from all </Proxy> # Use proxy to restrict the need for a port in the URL ProxyPass /vivo/ http://localhost:8080/vivo/ ProxyPassReverse /vivo/ http://localhost:8080/vivo/ ProxyPass / http://localhost/vivo/ ProxyPassReverse / http://localhost/vivo/

/etc/init.d/apache2 stop /etc/init.d/tomcat restart /etc/init.d/apache2 start

apt-get update apt-get install shibboleth-sp2-schemas libshibsp-dev apt-get install libshibsp-doc libapache2-mod-shib2 opensaml2-tools

cd /usr/sbin/

./shib-keygen -h shib.your.domain.edu

mkdir /etc/shibboleth/ssl

cp -rp /etc/shibboleth/sp-cert.pem /etc/shibboleth/ssl/YOUR.DOMAIN.EDU.cert cp -rp /etc/shibboleth/sp-key.pem /etc/shibboleth/ssl/YOUR.DOMAIN.EDU.pem

cd /etc/shibboleth mv shibboleth2.xml shibboleth2.xml.bak

wget http://YOUR.IDENTITYPROVIDER.EDU/linux.shibboleth2.xml

mv linux.shibboleth2.xml shibboleth2.xml

nano /etc/apache2/sites-available/default

# Path for authentication <Location /shibauth> AuthType shibboleth ShibRequireSession On ShibUseHeaders On require valid-user </Location> # Shib Variables Available to entire web server <Location /> AuthType shibboleth ShibRequireSession Off require valid-user ShibUseHeaders On require shibboleth </Location>

nano /etc/apache2/sites-available/default-ssl

<Location /shibauth> AuthType shibboleth ShibRequireSession On ShibUseHeaders On require valid-user </Location> # Shib Variables Available to entire web server <Location /> AuthType shibboleth ShibRequireSession Off require valid-user ShibUseHeaders On require shibboleth </Location>

uf_login_process.jsp webapp/src/edu/cornell/mannlib/VIVO/webapp/controller/edit/UfAuthenticate.java (Copy of Authenticate.java, Compiled)

about_body.jsp (Add html link to UF Shib Login) <strong>UF Shibboleth Login</strong><br/> <a href="http://vivotest.ctrip.ufl.edu/Shibboleth.sso/Login? target=<%= URLEncoder.encode("http://vivotest.ctrip.ufl.edu:8080/VIVO/uf_login_process.jsp" target="_self">Login &raquo;</a> webapp/WEB-INF/web.xml (Modified to reflect new class) <servlet> <servlet-name>ufauthenticate</servlet-name> <servlet-class>edu.cornell.mannlib.VIVO.webapp.controller.edit.UfAuthenticate</servlet-class> </servlet> <servlet-mapping> <servlet-name>ufauthenticate</servlet-name> <url-pattern>/ufauthenticate</url-pattern> </servlet-mapping>