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Adding myOntology.owl to the directory as shown above will automatically create the corresponding named graph in the triple store after Tomcat is restarted:

After restart, go to Site Admin → Ingest Data → Manage Jena Models.  Review the named graphs.  You should see:

http://vitro.mannlib.cornell.edu/filegraph/tbox/myOntology.owlImage Added

Modifying or removing the myOntology.owl file in the filegraph directory and restarting Tomcat will automatically remove the named graph.

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