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Dates

October 14 - November 1

Participants

  1. Andrew Woods
  2. William Welling
  3. Jim Wood
  4. Ralph O'Flinn
  5. Kristina Heinricy
  6. Robert Nelson
  7. Don Elsborg

Meetings

Objectives

  1. Orientation to VIVO Scholar for community developers (Don Elsborg , Andrew Woods)
    1. Setting up the environment
    2. Introducing existing documentation
    3. Loading test data
  2. VIVO Scholars community defaults (Don Elsborg , Ralph O'Flinn , Jim Wood)
    1. Defaults should approximate OpenVIVO
    2. Document how to customize branding, look and feel
    3. Document how to extend the ontology
  3. Externalizing the triplestore (Ralph O'Flinn)
    1. Potentially followed by externalizing TPF server
  4. Orcid integration (Kristina HeinricyRalph O'Flinn)
    1. pulling and pushing publications
  5. Vitro messaging service (William Welling)
    1. Documentation for RDF Delta Log Server connection configuration
    2. Documentation for spinning up RDF Delta Log Server
    3. Dockerfile for RDF Delta Log Server
    4. Documentation for Message Broker connection configuration
    5. Documentation for spinning up Message Broker
    6. Dockerfile for Message Broker
  6. NEMO Freemarker templates (Ralph O'Flinn)

Other

  1. Release 1.11.0
    1. Update Solr documentation
    2. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
  2. Extract ontology from codebase
  3. Extract languages from codebase

Tickets

Scrum Board

  1. Orientation to VIVO Scholars
    1. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    2. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    3. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    4. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
  2. VIVO Scholars community defaults
    1. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    2. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    3. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    4. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    5. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    6. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    7. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    8. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
  3. Externalizing triplestore
    1. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    2. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    3. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    4. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
  4. Orcid integration
    1. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    2. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    3. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    4. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
    5. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
  5. Vitro messaging
    1. Unable to locate Jira server for this macro. It may be due to Application Link configuration.
  6. NEMO
    1. Unable to locate Jira server for this macro. It may be due to Application Link configuration.


Reference

Stand-up Reports

Andrew

[VIVO Sprint Standup]
Finished yesterday:
- Reviewed https://jira.duraspace.org/browse/VIVO-1715
- Reviewed https://github.com/vivo-project/Vitro/pull/128
Working on today:
- Continuing with "Externalize TPF Server", by exploring TPF server options that connect via SPARQL
- https://jira.duraspace.org/browse/VIVO-1723
Blockers:
- None

William

[VIVO Sprint Standup]
Finished yesterday:
- None
Working on today:
- TDB RDF Delta Patch Messaging
- https://jira.duraspace.org/browse/VIVO-1718
- Resolving change requests to PR
- https://github.com/vivo-project/Vitro/pull/128
- Debugging vagrant deployment and testing
- Wrapping up design document
Blocker:
- vivo-vagrant tomcat not working
- resolved tar download
- resolved tomcat.service JAVA_HOME
- still failing, see error below
- https://github.com/vivo-community/vivo-vagrant

Rob

[VIVO Sprint Standup]
Finished yesterday:
- None
Working on today:
- Getting Duke data into scholars-discovery SOLR index (using harvester interface)
- Getting rid of bootstrap css in scholars-react
Blocker:
- None

Jim

[VIVO Sprint Standup]
Finished yesterday:
 - None
Working on today:
 - Update documentation based on feedback for: https://jira.duraspace.org/browse/VIVO-1715
 - Validate colorscheme for https://jira.duraspace.org/browse/VIVO-1713
Blockers:
 - None


William

[VIVO Sprint Standup]
Finished yesterday:
- None
Working on today:
- TDB RDF Delta Patch Messaging
- https://jira.duraspace.org/browse/VIVO-1718
- Soliciting code quality review and review of approch
- https://github.com/vivo-project/Vitro/pull/128
- Wrapping up vagrant deployment and testing
- Wrapping up design document
Blocker:
- None

Andrew

[VIVO Sprint Standup]
Finished yesterday:
- Resolved: "Verify installation documentation for Scholars angular"
- https://jira.duraspace.org/browse/VIVO-1708
- Resolved: "Admin documentation for externalized Solr"
- https://jira.duraspace.org/browse/VIVO-1706
- Explored: "Externalize TPF Server"
- https://jira.duraspace.org/browse/VIVO-1723
- Success with connecting standalone TPF server with VIVO's TDB (see PR in ticket above)
Working on today:
- Continuing with "Externalize TPF Server", by exploring TPF server options that connect via SPARQL
- https://jira.duraspace.org/browse/VIVO-1723
Blockers:
- None

Rob

[VIVO Sprint Standup]
Finished yesterday:
- Made simplistic sidebar web-component for scholars-react
Working on today:
- Getting Duke data into scholars-discovery SOLR index (using harvester interface)
- getting rid of bootstrap css in scholars-react
Blocker:
- None

Jim

[VIVO Sprint Standup]
Finished yesterday:
- Custom Page documentation for https://jira.duraspace.org/browse/VIVO-1715
- Ready for Review
Working on today:
- Validating colorscheme for https://jira.duraspace.org/browse/VIVO-1713
Blockers:
- Question: I'm not entirely clear on the development workflow. Is there a document? I moved a ticket to Review but haven't merged - is that right?


Rob

[VIVO Sprint Standup]
Finished yesterday:
- None
Working on today:
- Getting Duke data into scholars-discovery SOLR index (using harvester interface)
- Making sidebar web-component for scholars-react
Blocker:
- None

William

[VIVO Sprint Standup]
Finished yesterday:
- None
Working on today:
- TDB RDF Delta Patch Messaging
- Unable to locate Jira server for this macro. It may be due to Application Link configuration.
- Continuing vagrant deployment and testing
- Continuing design document
Blocker:
- None

Andrew

[VIVO Sprint Standup]
Finished yesterday:
- Initial testing of scholars-angular setup
- https://jira.duraspace.org/browse/VIVO-1708
- Works, but more documentation would be helpful
Working on today:
- Add more description to scholars-angular README
- https://jira.duraspace.org/browse/VIVO-1708
- Add to Benjamin Gross documentation for VIVO 1.11.0 Solr installation
- https://jira.duraspace.org/browse/VIVO-1706
Blockers:
- None

Don

[VIVO Sprint Standup]
Finished yesterday:
- Setup space on a RHEL7 system to do this work
- Installed and compiled VIVO harvester ( develop branch )
- updated our CU Faculty Test data
- Attempted to do an intial harvest on some faculty data to rdf output, but it failed
Working on today:
- Install VIVO 1.11 into a docker image on our RHEL7 server. This will use a TDB datastore
- Attempt to harvest faculty test data into new image
- if above works - download scholars discovery, compile, and attempt to extract VIVO data to create SOLR model
Blockers:
- Don't have tomcat running natively on our RHEL7 server, so need to run in docker. Will have to point the harvester to a shared volumne that holds the VIVO TDB datastore. This will be "interesting"

Jim

[VIVO Sprint Standup]
Finished yesterday:
- scholars-react README updates for Unable to locate Jira server for this macro. It may be due to Application Link configuration.
Working on today:
- Working example of a custom page and query pair for same
Blockers:
- None


Andrew

[VIVO Sprint Standup]
Finished yesterday:
- Updated sprint tickets (all, please review)
- https://wiki.duraspace.org/display/VIVO/2019-10+Sprint#id-2019-10Sprint-Tickets
- Resolved: "Verify installation documentation for Scholars discovery"
- https://jira.duraspace.org/browse/VIVO-1719
- Need reviewer(s)!
Working on today:
- "Verify installation documentation for Scholars angular"
- https://jira.duraspace.org/browse/VIVO-1708
- Time permitting, begin investigation of "Externalize Triplestore"
- https://jira.duraspace.org/browse/VIVO-1707
Blockers:
- None
Note:
- Please assignee yourself to any tickets that you are working on, and click the "Start Work" button if you have started work.


Rob

[VIVO Sprint Standup]
Working on today:
- Getting Duke data into scholars-discovery SOLR index (using harvester interface)
- Making sidebar web-component for scholars-react
Blocker:
- None


William

[VIVO Sprint Standup]
Finished yesterday:
- None
Working on today:
- TDB RDF Delta Patch Messaging
- Unable to locate Jira server for this macro. It may be due to Application Link configuration.
- working on vagrant to deploy and test
- working on design document
Blockers:
- None


Jim

[VIVO Sprint Standup]
Finished yesterday:
- Tab Component for Vivo Scholars Sprint 9
- https://github.com/vivo-community/scholars-react/issues/5
Working on today:
- Document theme and customization methods for scholars react
- https://jira.duraspace.org/browse/VIVO-1715
Blockers:
- None



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