Date

13 Jun 2023

Call-in Information

Time: 10:00 am, Eastern Time (New York), 4pm Central European Summer Time

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Slack

https://vivo-project.slack.com
- Self-register at: http://bit.ly/vivo-slack

Attendees

Indicating note-taker

Agenda

Questions/Issues/Pull requests/Announcements
- On Monday, 11th of September 2023 there will be a VIVO Meetup as a collocated event of the SWIB Conference on "Semantic Web in Libraries" in Berlin (GER)
- VIVO REST API (Dynamic API) for Persons
- Long delay when logging in
  - PR created
- Publication claiming
  - Documentation to be updated
- CSV import (data ingest)
  - https://vivo-project.slack.com/archives/C8SDQQYJ2/p1686602428183489?thread_ts=1686583356.469989&cid=C8SDQQYJ2
  - a csv file with all the main fields required in vivo: full name, affiliation, geographic location, keywords, teaching. Each row represents a different faculty member.
VIVO 1.14.0 RC 3
- blocking issues
  - data with blank nodes
    - https://github.com/vivo-project/VIVO/issues/3871
      - resolved in https://github.com/vivo-project/Vitro/pull/393
    - https://github.com/vivo-project/VIVO/issues/3884
      - in review - https://github.com/vivo-project/Vitro/pull/397
  - Long delay when logging in
    - https://github.com/vivo-project/VIVO/issues/3885
      - in review - https://github.com/vivo-project/Vitro/pull/395
  - missing labels
    - https://docs.google.com/spreadsheets/d/1goXRUsp5QlDGYu5sLOeggisjremBbN8v3iJ1ovFxQ3A/edit?usp=sharing
    - https://github.com/vivo-project/VIVO/issues/3886
      - in review - https://github.com/vivo-project/Vitro/pull/394
- Hopefully RC3 will be published at the end of this week
- Testing week after that
  - Release Testing - 1.14.0
Summer period meetings
- 04.07., 18.07., 01.08., 15.08.

Notes

Questions/Issues/Pull requests/Announcements

DRAGAN: Meetup in Berlin, Georgy will be there. Progress in REST DYNAPI, we need to fix some issues which was expected. Once we make it work for persons, it would be easier for other entities CRUD operations. Long delay when logging in PR created, in new release it will be fixed, its in review phase in the moment. CSV import issue, does anyone in this group have experience with that?

BRIAN: One tool that exists is the VIVO pump, just to get some stuff loaded from spreadsheets, with standard csv based import (fixed fields or you can provide your spreadsheet definition - documentation). You can just produce the RDF file or connect to API and import it directly.

MICHEL: You can use my semantic-web-studio which is on my GitHub to transform JSON data to RDF format and then use SPARQL query to import it in VIVO. Its bash tool and easier to use but unfortunately it’s not documented.

There is also csv2rdf (jena) tool - https://github.com/anuzzolese/csv2rdf

VIVO 1.14.0 RC 3

DRAGAN: Great collaborative work on missing labels. Some PR-s are already merged or ready to be merged so RC will be published soon.

GEORGY: I made a dataset log.

Summer period meetings

DRAGAN: We will organise weekly meetings until 4th of july and then go bi-weekly until middle of august because there is not very much activity but everyone who has an important topic to discuss is free to write me anytime.

MICHEL: I will work hard to make my presentation next week, I have interesting results so its better not to let it sit. It is about VIVO connected with a remote graph base.

Draft notes in Google Docs

Task List

Dragan Ivanovic to document publication claiming feature
Kshitij Sinha will inform Michael Bentz and other UF members about progress in resolving issue related to the long delay in logging in
Dragan Ivanovic will communicate further will Ceci and Rodrigo about csv import into the VIVO graph
Brian Lowe will complete https://github.com/vivo-project/Vitro/pull/397, Dragan Ivanovic and Georgy Litvinov will review
Brian Lowe will review https://github.com/vivo-project/Vitro/pull/395
Dragan Ivanovic will prepare RC once when all blocking issues are resolved

Previous Tasks

Dragan Ivanovic to discuss with VIVO committers whether we can improve VIVO WCAG compliance
Brian Lowe will work on implementation of https://github.com/vivo-project/VIVO/issues/3770
Dragan Ivanovic will increase priority of https://github.com/vivo-project/VIVO/issues/3858, and https://github.com/vivo-project/VIVO/issues/3859
Dragan Ivanovic will continue communication with Joseph about the issue with mass removing data via slack
Dragan Ivanovic to share results of discussion about using Docker images with Rodrigo via https://groups.google.com/g/vivo-tech/c/yAOHcsJg8ro (the problem might be that VIVO docker container is not seeing vivo-solr container, meaning it is a network mode issue)
Dragan Ivanovic to reorganize VIVO upgrade wiki pages - Upgrading VIVO
Maxim Prokopenko to open a ticket (bug) for Solr index directory mount with docker compose (https://github.com/vivo-project/VIVO/issues/3857)
All to think about priorities for further development of VIVO
Dragan Ivanovic to check whether PDFDocument class is needed at all (and itext dependency)
Dragan Ivanovic to open a ticket (github issue) for ingesting sample data memory problem
all
- to provide feedback on https://docs.google.com/document/d/1jIIr90vTpI4l5KZeM30f_gOc-TpmlgKol-2oOEaU2Is/edit?usp=sharing,
- consider participating in https://forms.gle/16QbRU62CmJCaeJp8
- check personal calendars for the next sprint (May 22nd - June 9th, 2023)
Dragan Ivanovic to announce publishing VIVO 1.14.0 RC2
someone to test RC2
- Ivan Mrsulja tested RC2
Dragan Ivanovic to create survey for collecting standard practice in VIVO deployment process

Dragan Ivanovic to add columns in the project board for Priority and Difficulty.
Sprint participants to read description of issues and think about their preferences.

Dragan Ivanovic will contact Lyrasis admins to get an account for https://vivo.lyrasis.org/
Dragan Ivanovic will fix issues with layout and French sample data and publication graph - https://github.com/vivo-project/VIVO/pull/3810
Georgy Litvinov will fix the issue with faux data properties with xml literal range - https://github.com/vivo-project/Vitro/pull/363
William Welling will review previously described issues
Dragan Ivanovic will work on specification of tasks for the next sprint - https://github.com/orgs/vivo-project/projects/5 and https://github.com/orgs/vivo-project/projects/6
Dragan Ivanovic to send a test email through contact form - https://vivo.lyrasis.org/contact/
William Welling to complete review/testing of https://github.com/vivo-project/VIVO/pull/3805 and to summarize results in the PRs comments
Dragan Ivanovic to review William's comments and check what should be fixed/resolved before merging of the the branch
- Georgy Litvinov to fix issues with Russian email templates
- Georgy Litvinov to fix issues with faux data properties
All to think about organization/improvements of sample data, Dragan Ivanovic to add an item in the next week agenda for discussion
Dragan Ivanovic in communication with Georgy Litvinov to write/update documentation for faux (data) properties
Dragan Ivanovic to review and merge
- https://github.com/vivo-project/Vitro/pull/360
- https://github.com/vivo-project/Vitro/pull/361

Brian Lowe to review https://github.com/vivo-project/VIVO/pull/3788 and https://github.com/vivo-project/Vitro/pull/341 preferably by end of the week (11/25/2022)
Brian Lowe to review https://github.com/vivo-project/Vitro/pull/347
Michel Héon to validate https://github.com/vivo-project/Vitro/pull/347 and test performance with remote Fuseki
Anyone to validate https://github.com/vivo-project/Vitro/pull/348 and https://github.com/vivo-project/VIVO/pull/3797 preferably by end of the week (11/25/2022) - description how it should be validated provided in the PR description
Benjamin Kampe to review https://github.com/vivo-project/Vitro/pull/349 and https://github.com/vivo-project/VIVO/pull/3795 preferably by end of the week (11/25/2022)
Dragan Ivanovic to create PR in cooperation with Michel Héon for merging ttl files (labels' translations) into Vitro/VIVO repositories
Dragan Ivanovic to ask Arif for more info on the reported issue - https://groups.google.com/g/vivo-tech/c/gmyQIMWbm_Y
Dragan Ivanovic to open a ticket for https://groups.google.com/g/vivo-tech/c/wDblxLmeTjs. Done, ticket available at https://github.com/vivo-project/VIVO/issues/3772
Dragan Ivanovic will redirect reporter of this issue https://github.com/vivo-community/vivo-docker2/issues/22 to https://github.com/vivo-project/VIVO#docker
All to analyze the issue reported in the slack (https://vivo-project.slack.com/archives/C8RL9L98A/p1663253504895989) and check whether we should open a GitHub issue and add to the i18n redesign project board - https://github.com/orgs/vivo-project/projects/4
Brian Lowe will respond on the email https://groups.google.com/g/vivo-tech/c/5AY9h15h4vc/m/OjqekVxlBgAJ?utm_medium=email&utm_source=footer&pli=1
All to consider participation in the sprint and register via https://forms.gle/qLi1PhRrrpvUrrYRA
Dragan Ivanovic to work on specification of tasks for the sprint - GitHub project board
Michel Héon to work on the translation messages ontology
Dragan Ivanovic will bring up with leadership group that we would like to set up task force for dynamic API
Dragan Ivanovic will create infrastructure for the next sprint (slack channel, GitHub project board, wiki page, GitHub branch, GitHub issues, etc.)
Michel Héon to work on the ontology for UI labels (in multiple languages)
All to think about dates for the next sprint
Dragan Ivanovic to resolve conflicts for https://github.com/vivo-project/Vitro/pull/311 and https://github.com/vivo-project/Vitro/pull/297
Dragan Ivanovic to write script for preparing a release candidate - started at https://github.com/chenejac/VIVO-release-publisher
All to test the release candidate - Release Testing - 1.13.0
Dragan Ivanovic to publish VIVO 1.13.0 release (if there is no reported issue till 1st of September)
Dragan Ivanovic to prepare presentation for demo meeting - 2022-07-07 - Dynamic API demo meeting
Dragan Ivanovic to send reminder for the demo meeting - 2022-07-07 - Dynamic API demo meeting
Dragan Ivanovic to open an issue for a reverse proxy (redirecting) - https://vivo-project.slack.com/archives/C8RL9L98A/p1651739159126489
- https://github.com/vivo-project/VIVO/issues/3698
Dragan Ivanovic to contact Andrew Wood for resolving the issue with registration for the Slack channel
All to consider participation in the sprint and if decide to participate to register for the sprint - link
Dragan Ivanovic to send a require to add in the Leadership group agenda a topic for discussing Copyright owner in License
All please help in filling this document - spreadsheet
Dragan Ivanovic to create a draft version of a Google Spreadsheet document with labeled columns representing requirements and to share with committers
Committers to review the structure of the document and to fill it with data for JS and CSS frameworks