E

MedlineCitation

Top Level element in a MedlineCitationSet and contains one publication

V

RDF Element

A

Owner

Attribute of Medline Citation, the owner of the article is the party responsible for creating and validating the citation. There are only 8 possible owners

A

Status

The status is the stage the citation is currently in there are seven values; Completed, In-Process, PubMed-not-Medline, In-Data-Review, Publisher, MEDLINE, OLDMEDLINE

S

Main Citation (VD: not needed unless for scoring. We only want to pull in "completed")

E

PMID

The Pubmed unique identifier

V

Main Citation

E

DateCreated

The date the processing of the citation began. It has three sub elements Year, Month, and Day

S

Main Citation

E

DateCompleted

Date processing of the record ends

S

Main Citation

E

DateRevised

Identifies the date a change has been made. Only occurs in records that are MEDLINE, OLDMEDLINE, PubMed-not-MEDLINE

S

Main Citation

E

Article

The wrapper around the non medline information about an article, like Authors and Title

N/A

A

PubModel

This describes how the publication was distributed and is apart of Article. There exist four values; Print, Print-Electronic, Electronic, Electronic-Print

UnK

(VD: Change to N/A)

E

Journal

The envelope around the Journal information about an Article

V

(VD: This is only an envelope. Not needed?)

E

ISSN

The ISSN, International Standards Serial Number is an 8 charcater value that identifes the journal

V

Journal Entry

A

ISSNType

Journals that have multiple distributions have multiple ISSNs, there are two types; Print and Electronic

UnK

(VD: change to N/A)

E

JournalIssue

Containes information about the specific issue the article resides in

Journal Entry (VD: N/A)

A

CitationMedium

The medium that was used to process the article. Two values; Internet or Print

UnK

(VD: N/A)

E

Volume

The volume number that the article resides

V

Main Citation

E

Issue

Identifies the issue that the journal resides in

V

Main Citation

E

PubDate

The publication date for the article has sub elements, year, month, and day and medlinedate

UnK

(VD: data should be parsed into core:year, core:yearMonth, and core:date)

E

MedlineDate

Dates that can not be parsed will be found in this sub element of PubDate

N/A

E

Title

The title of the Journal that the article was published in

V

Journal Entry

E

ISOAbbreviation

Used for linking from GenBank to PubMed

(VD: N/A)

E

ArticleTitle

The entire title of the Journal Article

V

Main Citation

E

Pagination

The pages that the article occurred on

V

Main Citation

E

ElocationID

Procides an electronic location for items which lack standard page numbers

UnK

(VD: N/A)

E

Abstract

Wrapper around information about the Abstract

N/A

E

AbstractText

Actual Text of the abstract, not always available

V

Main Citation

E

CopyrightInformation

Appears for articles where the publisher or author claim copyright on the citation

N/A

E

Affiliation

A string containing the afilliation information for the 1st Author

S

Main Citation

E

AuthorList

Wrapper around the list of authors for a citation

N/A

E

Author

The Author of the Article in order as they appear in the publication sub elements include lastname, forename, suffix and initials

V

Individual Author

E

LastName

The Surname of the author

V

Individual Author

E

ForeName

The remainder of the name excluding the suffix, this is often only the initials of an individual spaced out

S

Individual Author

E

Suffix

A persons suffix NOT honorific

S

Individual Author

E

Initials

Often identical to the ForeName without spaces, this contains 2 initials for a person

S

Individual Author

E

Language

Three letter description of the language the article was published in

UnK

(VD: N/A)

E

Databank

Contains information pertaining to the registration of several types of data. this data includes: molecular sequence data, clinical trial numbers, gene expression/molecular abundance data, and PubChem. This field is being ignored for now.

N/A

?

DOI

This is the DOI, as listed in PubMed.

?

(VD: use bibo:doi)

E

GrantList

Wrapper for the list of grants related to the publication.

N/A

E

Grant

Wrapper for the information about a single grant. Expect Inclusion of this data property in milestone 4.

UnK

Individual Grant (VD: N/A)

E

GrantID

The contract number of the grant

UnK

Individual Grant (VD: Is it possible to link a publication entity to a grant entity using the grant ID property "core:sponsorAwardId")

E

Acronym

The 2 letter acronym of the grant

UnK

Individual Grant (VD: N/A)

E

Agency

The agency that supplied the grant

UnK

Individual Grant (VD: N/A)

E

Country

Country of the grant agency

UnK

Individual Grant (VD: N/A)

E

PublicationTypeList

Wrapper containing a list of article types

N/A

E

PublicationType

V

see below for map of types to vivo classes

Main Citation

E

VernacularTitle

The title of the publication in its originating language.

UnK

(VD: N/A)

E

ArticleDate

the date the publisher made an electronic version of the article

UnK

(VD: N/A)

E

Country

the country the article was published in

UnK

(VD: N/A)

E

MedlineTA

The Medline Title Abbreviation for the Journal. The site

contains all of the rules used by NLM to abbreviate a title.

UnK

(VD: N/A)

E

NlmUniqueID

the accession number for the journal the article was written in.

UnK

(VD: N/A)

E

ISSNLinking

the ISSN designated by the ISSN Network to enable co-location or linking among the different media versions of a continueing resource

UnK

(VD: N/A)

E

ChemicalList

The wrapper for a list of chemicals

UnK

(VD: N/A)

E

Chemical

the chemical being specified in the NLM record

UnK

(VD: use core:freetextKeyword)

E

Registry Number

a unique 5-9 digit number in a hyphenated format assigned by the Chemical Abstract Services.

UnK

(VD: N/A)

E

Name of Substance

the name of the substance that the registry number identifies

UnK

(VD: use core:freetextKeyword)

E

CitationSubset

The subset that Medline records from certain sources or on certain topics were assigned.

UnK

(VD: N/A)

E

CommentsCorrections

This section details various citation notes, its unknown how this would be used by scoring and even more unknown if its needed in the main citation on VIVO.

UnK

(VD: N/A)

E

GeneSymbolList

The wrapper for gene's listed in a publication

UnK

(VD: N/A)

E

GeneSymbol

The abbreviated form of the gene name as reported in the literature

UnK

(VD: N/A)

E

MeshHeadingList

Wrapper for the list of Mesh Terms associated with an article

N/A

E

MeshHeading

The individual Mesh Term for a publication, it has a descriptor and qualifier.

S

Mesh Term

E

DescriptorName

The main term, if its a central concept of the paper its marked as MajorTopic.

S

Mesh Term

E

QaulifierName

A sub heading of the Descriptor Name.

S

Mesh Term

E

NumberOfReferences

Number of Bibliographic references in the article

N/A

(VD: N/A)

E

PersonalNameSubjectList

The names of people that appear in the article (such as biographical notes or obituaryies).

N/A

(VD: N/A)

E

OtherID

ID's of other collaborating partners with NLM. This information is not used at the present time but may be added later.

UnK

(VD: N/A)

E

OtherAbstract

Alternative abstracts created by a collaborating partner or other entity

UnK

(VD: N/A)

E

KeywordList

A list of Keywords assigned by a collaborating data producer, or in the case of oldmedline before there was mesh by NLM itself.

UnK

(VD: use core:freetextKeyword)

E

SpaceFlightMission

If a citation was created by NASA it may come with information on the space flight mission that the research was conducted on.

UnK

(VD: N/A)

E

InvestigatorList

For citations created by NASA originally, and other data partners later, the investigator is the PI on the grant that the research was produced. This is stored in the same format as the Author list

UnK

(VD: N/A)

E

GeneralNote

Descriptive information provided by an NLM partner.

UnK

(VD: N/A)

E

DeleteCitation

Most of the data is removed, but the stub is marked as deleted. We shouldn't be ingesting these publications.

N/A