Page History

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Attendees

• Mike Conlon
• Andrew Woods
• Julianne Schneider
• Marijane White
• Muhammad Javed

Agenda

1. Mike – Catching up. development changes. Review actions items
2. Javed – filegraph.owl
3. All – proposed simple changes to demonstrate process.

Notes

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1. The group shared history about the purpose of the group and discussed confusion over the existence of vivo-ontology-lab organization in GitHub.  Following discussion, the group decided to continue to use it for the time being.  A branch in the VIVO project might be preferable eventually.
2. Javed described the changes made to produce fielgraph.owl, a single file containing the VIVO ontology which replaces the files in rdf/tbox.  See below.
3. Next time (Feb 6) – test results, and discussion of simple changes to demonstrate complete ontological change process.

TBOX Folder Ontological Changes:

Muhammad Javed, Jan 23, 2018

tbox/filegraph/

1. filegraph.owl (Added)
2. ApplicationConfig.owl (Added)
3. All ontological files are merged into filegraph.owl
4. All annotation related files are merged into ApplicationConfig.owl (e.g. linkSuppression.n3)
5. owl:NamedIndividuals removed from filegraph.owl (They already exist in abox folder)

tbox/firsttime/

1. initialTBoxAnnotations.n3 file had rdfs labels for a large number of classes and properties. Labels have been removed from initialTBoxAnnotations.n3 file and are added in tbox/filegraph/filegraph.owl
2. additionalHiding.n3 (Deleted)
3. initialTBoxAnnotations.n3 (Deleted)
4. Annotations from additionalHiding.n3 and initialTBoxAnnotations.n3 are merged in one single file, named as vitroannotations.n3

Completed items

1. Deliverable 1 has been completed.  See https://goo.gl/vRkQl4
2. Create a group of committers and reviewers.  See https://github.com/openrif/vivo-isf-ontology
3. Create a folder of exported VIVO ontology files from VIVO 1.9.2.  See https://goo.gl/kUjT1Q
4. Explore track changes in WebProtege.  Done.  No interest from the group in WebProtege.

5. Triage and move issues from community repository to the master repository. Done

   1. Issues moved from community to vivo-isf-ontology.  Tagged VIVO as appropriate.

   2. Additional issues opened in community

   3. Issues from VIVO JIRA added to community of vivo-isf-ontology as appropriate

   4. VIVO JIRA ontology issues opened to stay in synch (2 pending close were not added)

   5. 18 issues in community,  37 vivo issues in vivo-isf, 45 ontology issues in VIVO JIRA
6. A preliminary version of filegraph.owl has been completed and is available for inspection in the Google Drive folder:  https://goo.gl/TLjNdj  Notes regarding this file are available here:  https://goo.gl/pxAVH1

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1. Complete deliverable 2.  The draft process is complete with comments resolved and RACI chart included. Please see https://goo.gl/6ZYqry

2. Explore Robot tool (actively supported) for ontology improvement and VIVO extraction. Run their tests (in progress)

3. Create a viable VIVO-ISF master containing VIVO ontologies (in progress)
   

   1. See summary of ontology sources here:  https://goo.gl/Wztgon
      

   2. See filegraph.owl in Google Drive folder here:  https://goo.gl/TLjNdj

4. Javed to present his ontology for tracking ontology changes at a future meeting (will be complete Aug 28)

5. Define roles and responsibilities of participants -- analyst, editor, committer, tester (complete, see RACI chart in process doc draft here:  https://goo.gl/6ZYqry

6. Create workflows and documentation (“instruction manuals”) for each of those roles (not started, likley one page each in the vivo-isf wiki)

7. Mike will test Javed's changes by building VIVO from vivo-ontology-lab, adding sample data, and considering a process for updating an existing VIVO to one using filegraph.owl.