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Dates: April 23 - May 4

TEAM:

  1. Muhammad Javed (Cornell)
  2. Mike Conlon (VIVO)
  3. Jim Blake (Cornell)
  4. Benjamin Gross (Clarivate)
  5. Marijane White (OHSU)
  6. Tatiana Walther (TIB)
  7. Kitio Fofack (UQAM)
  8. Ralph O'Flinn (UAB)
  9. Don Elsborg( CU Boulder )
  10. Christian Hauschke (TIB)

Tasks

Table of Contents
excludeDates.*

Re-evaluation of 1.10 branch. (Testing) 

Jira
serverDuraSpace JIRA
serverIdc815ca92-fd23-34c2-8fe3-956808caf8c5
keyVIVO-1410

    1. Create a new release candidate

    2. We will be testing vivo-ontology-lab pull request. https://github.com/vivo-project/VIVO/pull/63

    3. Is it good to go in production?

    4. Preparing documentation for release
    5. Team: Mike Conlon (VIVO) Muhammad Javed (Cornell) Benjamin Gross (Clarivate) Ralph O'Flinn (UAB)

    6. DELIVERABLES:

      1. Pull request merge in dev (and merge to master??)

Elastic Search 

Jira
serverDuraSpace JIRA
columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
serverIdc815ca92-fd23-34c2-8fe3-956808caf8c5
keyVIVO-1423

  1. Decompose the task into smaller sections and focus on what can be achieved in two weeks time.

  2. Team: Benjamin Gross (Clarivate)Jim Blake (Cornell), Don Elsborg ( CU Boulder )
  3. DELIVERABLES:


VIVO ontology & Ontologies.owl file update

Jira
serverDuraSpace JIRA
serverIdc815ca92-fd23-34c2-8fe3-956808caf8c5
keyVIVO-1463

Jira
serverDuraSpace JIRA
serverIdc815ca92-fd23-34c2-8fe3-956808caf8c5
keyVIVO-1447

    1. Replacing multiple vivo ontology files with a single one vivo.owl ontology task force group created.

      1. We will test if vivo.owl contains all entities (classes/properties) that exist in current VIVO software.

      2. We will test if ontologies.owl file is complete. All ontologies are mentioned in siteAdmin page. (ontologies.owl)

    2. Team: Muhammad Javed (Cornell), Mike Conlon (VIVO), Marijane White (OHSU)
    3. DELIVERABLES:
      1. A decision that changes are good to go in production or not ready (with comments)

VCARD ontology update (HomeWork)

Jira
serverDuraSpace JIRA
serverIdc815ca92-fd23-34c2-8fe3-956808caf8c5
keyVIVO-1341

Jira
serverDuraSpace JIRA
columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
serverIdc815ca92-fd23-34c2-8fe3-956808caf8c5
keyVIVO-1369

Jira
serverDuraSpace JIRA
columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
serverIdc815ca92-fd23-34c2-8fe3-956808caf8c5
keyVIVO-1461

  1. Homework: Evaluation, what has been changed, what should be removed, what should be updated, building the VCARD ontology module file (Add/Retract).

  2. Team: Tatiana Walther (TIB), Muhammad Javed (Cornell), Mike Conlon (VIVO)

  3. DELIVERABLES:

    1. A file that contains list of VCARD entities that are used in vivo software but with a second column, specifying if the entity is current, changed or is deprecated (do not exist) in the current VCARD ontology. (current/deprecated/changed).

    2. A file that contains vcard graph that should be removed from vivo.owl

    3. A file that contains vcard graph that should be added in vivo.owl.

Preparation of ontology modules for the candidate ontologies/entities to be deleted. (Homework)

Jira
serverDuraSpace JIRA
columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
serverIdc815ca92-fd23-34c2-8fe3-956808caf8c5
keyVIVO-1461

  1. Homework: Preparing ontology module files for the candidate ontology entites to be deleted from vivo.owl

  2. Once re-organized ontology files are in place, next step is to clean ontologies/entities that do not sit well with VIVO. In this task, we will analyze.

  3. Which one of the ontologies are candidate to be removed.

  4. If removed, pull the graph out and make it available for those who would like to use It (in case).

  5. Team:Muhammad Javed (Cornell), Mike Conlon (VIVO)
  6. DELIVERABLES:

    1. Graph file(s) of the candidate ontology modules to be removed.                                             

      1. Updated vivo.owl file.

      2. Updated ontologies.owl file

Multi-Language Support

 

Jira
serverDuraSpace JIRA
columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
serverIdc815ca92-fd23-34c2-8fe3-956808caf8c5
keyVIVO-1451

    1. Implement this feature on Capability map as a proof of concept of this issue. A user should be able to view the capability map in the language selected switching languages should change the language in which the map is displayed. The scope include making modifications at all levels of the application including templates, Javascripts, Java code, SPARQL queries and Ontology.
    2. Team:Kitio Fofack (UQAM), Christian Hauschke (TIB)

    3. DELIVERABLES: