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- Under the "Search Builder", select "Affiliation" and enter "University of Florida" into the text box. Then click on the "Add to Search Box" button.
- Select "Completion Date", and enter "2011/06/01" into both text boxes, meaning from 2011/06/01 to 2011/06/01. Then click on the "Add to Search Box" button.
- Copy the text from the "Search Box" and paste to a text editor for later use for Harvester.
(University of Florida[Affiliation]) AND "2011/06/01"[Completion Date] : "2011/06/01"[Completion Date]
- Click on the "Search" button.
- One should see results displayed on the PubMed site.
4. In this example, the above search text was used for Harvester. Hence, the default "termSearch" in the file /config/tasks/ufl.pubmedfetch.xml was replaced.
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<?xml version="1.0" encoding="UTF-8"?>
<Task>
<Param name="email">swilliams@ichp.ufl.edu</Param>
<Param name="termSearch">(University of Florida[Affiliation]) AND "2011/06/01"[Completion Date] : "2011/06/01"[Completion Date]</Param>
<Param name="numRecords">ALL</Param>
<Param name="batchSize">1000</Param>
</Task>
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PubMed uses the Medline schema for storing citations. Medline is the Medical Literature Analysis and Retrival System Online (Medlars Online). This page shows details about what attributes from PubMed are transformed into what elements in VIVO's schema.
Scoring
Visit this page for general scoring methodology used by the Harvester. By default, PubMed Harvester uses two algorithms, EqualityTest and NormalizedLevenshteinDifference for scoring.
Matching
Visit this page for general matching methodology used by the Harvester.
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