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New – Google Doc for notes during the call

  • http://goo.gl/cTLlC is open for editing
  • add your own updates, questions, or notes and see what others are typing

Updates

add more bullets as necessary

  • Brown 
  • Colorado
  • Cornell
  • Duke
  • Indiana – should we schedule a code review?
  • Memorial
  • NYU
  • Penn
  • PSU
  • Stony Brook
  • UCLA
  • UCSF
  • Weill Cornell

Implementation Fest outcomes and feedback

For those who attended, what did you find most useful? What did you learn? What impressed you about other VIVO implementations?

Report on Saturday coding activities

If you haven't yet, please provide feedback (anonymously if desired) at http://goo.gl/z9lUr

Twitter stream: https://twitter.com/search?q=%23vivoifest13&src=hash

2013 VIVO Conference Call for Posters and Papers – due May 10

Upcoming Webinars

  • DuraSpace will be organizing and publicizing a series of 3 webinars in May and June focusing on VIVO
  • The first (May 14) will be a general introduction
  • The second (June 4) will include 3 case study presentations on VIVO implementations at Colorado, Brown, and Weill Cornell Medical College
  • The final webinar will be a "technical deep dive" on June 11

Notable implementation and development list traffic


New
  • Harvester transfer dying unexpectedly (Giuseppe)
    • on a 64-bit machine I experience this strange issue of the harvester-transfer reporting
      "killed". Here's the extract of the log.
      • 2013-04-26 18:08:51.747 TRACE [o.v.h.u.r.JenaConnect] loading record: publication/75007
      • 2013-04-26 18:08:53.570 TRACE [o.v.h.u.r.JenaConnect] loading record: publication/75008
      • /root/vivo/harvester/bin/harvester-transfer: line 29:  1328
      • Killed java $OPTS -Dprocess-task=Transfer org.vivoweb.harvester.transfer.Transfer "$@"

    • Note that this happens after hundreds of publications have been loaded.

  • Search in Chinese (Jianwei) – a local fix that will be added to VIVO 1.6
    • Locate the file vitro-core/webapp/src/edu/cornell/mannlib/vitro/webapp/controller/freemarker/UrlBuilder.java
    • In this file, search for the two occurrences of "ISO-8859-1" and replace them with "UTF-8"
    • Rerun "ant all" to rebuild VIVO
    • After restarting Tomcat, the links on the right side of the search results should work properly with Chinese characters
  • SQLNestedException: Cannot get a connection, pool error Timeout waiting for idle object (Tom T.)

    • related to MySQL max_connections configuration? – seems unlikely
    • checking vivo e 'show processlist' while performing a reindex if possible

Call-in Information

Topic: VIVO weekly call

Date: Every Thursday, no end date

Time: 1:00 pm, Eastern Daylight Time (New York, GMT-04:00)

Meeting Number: 641 825 891

To join the online meeting

Go to https://cornell.webex.com/cornell/e.php?AT=WMI&EventID=167096322&RT=MiM2

If requested, enter your name and email address.

Click "Join".

To view in other time zones or languages, please click the link: https://cornell.webex.com/cornell/globalcallin.php?serviceType=MC&ED=167096322&tollFree=1

If those links don't work, please visit the Cornell meeting page and look for a VIVO meeting.

To join the audio conference only

To receive a call back, provide your phone number when you join the meeting, or call the number below and enter the access code.

Call-in toll-free number (US/Canada): 1-855-244-8681

Call-in toll number (US/Canada): 1-650-479-3207

Global call-in numbers: https://cornell.webex.com/cornelluniversity/globalcallin.php?serviceType=MC&ED=161711167&tollFree=1

Toll-free dialing restrictions: http://www.webex.com/pdf/tollfree_restrictions.pdf

Access code:645 873 290

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