You are viewing an old version of this page. View the current version.

Compare with Current View Page History

« Previous Version 4 Next »

Calls are held every Thursday at 1 pm eastern time (GMT–4 in daylight savings, GMT-5 standard time) – convert to your time at http://www.thetimezoneconverter.com

View and edit this page permanently at https://wiki.duraspace.org/x/NQaeAg, or use the temporal Google Doc for collaborative note taking during the call.

Announcements

Upcoming Events

  • DuraSpace Sponsor Summit: March 11-12 in Washington DC

    • VIVO Project Sponsors that plan to attend in person or remotely should contact Kathryn by email if you have questions

  • 2014 VIVO Implementation Fest: Wednesday & Thursday, March 19-20, at Duke University in Durham, NC

    • 2014 VIVO Hackathon: on Tuesday, March 18 preceding the IFest at Duke University – Chris Barnes and Ted Lawless are soliciting input on possible development projects

    • 2014 VIVO Ontology working session (half-day) – morning of Friday March 21 at Duke University – will confirm point of contact

    • Paolo Mangiafico at Duke has created a poll to determine interest in an Symplectic Elements-related meeting for other IFest attendees. He's included poll times that overlap with the iFest program, but suspects that the best times will be on Tuesday or Friday before or after the main VIVO program. There's also the possibility of organizing an informal/social dinner one of the evenings of the iFest, either in addition to or instead of a more formal meeting, so he included some evening times too. If you're interested in meeting, please indicate your preferences here: http://doodle.com/g88inmep6g63t7py

  • CASRAI U.S. Summit on Wednesday, April 9 at the American Psychological Association headquarters in Washington, DC

  • Other VIVO-related events? We plan to centralize VIVO event listings/calendars in one place soon, and will link to this here

Updates

  • Brown
  • Colorado
  • Cornell
  • Duke
  • Florida
  • Memorial
  • RPI
  • Scripps
  • Stony Brook
  • Texas A&M
  • UCLA
  • UCSF
  • Virginia Tech
  • Weill Cornell
  • any others?

Notable list traffic

Multiple issues with the Harvester, some of which have been addressed and some which would benefit from a more active Harvester communication through the Apps&Tools working group meetings, sharing the vivo-dev-all list so we all stay informed

  • (Christian, Hannover) trouble even getting the Harvester running, documented at https://github.com/vivo-project/VIVO-Harvester/issues/14
  • (Eric, New Mexico) Success helping Isuru at Indiana University get past problems by switching to the National Library of Medicine's newer version of the jar file eutils_axis2.jar.  See this folder:  ftp://ftp.ncbi.nlm.nih.gov/pub/eutils/soap/v2.0/java/current/. This requires updating all Axis2 1.5.4 dependencies to Acis2 1.6.2, and switching to using the harvester-pubmedhttpfeatch script instead of harvester-pubmedfetch (though you've got to make the termSearch value in pubmedconfig.xml URL-safe, and replace the space character with "+")
  • (Stephen) The Harvester infrastructure doesn't need changing to work with 1.6.  It could use changing to help it work with the API's better, but to get data in and out of VIVO it won't need any changes.  There are a couple of things an ontologist could probably do to help transition the script from 1.5 to 1.6.  The main changes are in the XSLT and Score (which you define data properties to evaluate).

Deleting multiple labels for classes

  • (Brian, Han) Since the ontology is in a different graph, removing extra ontology class or property labels requires including triples in the OWL namespace with the RDF being retracted

Fatal error when trying to replicate a VIVO in another location

  • (Jim, Anson) Looking into subtle Tomcat permissions issues and missing files

Will the VIVO 1.6 ontology load in Protégé? – try Protégé version 4.3

See the vivo-dev-all archive and vivo-imp-issues archive for complete email threads

Call-in Information

  • Date: Every Thursday, no end date
  • Time: 1:00 pm, Eastern Daylight Time (New York, GMT-04:00)
  • Meeting Number: 641 825 891

To join the online meeting

To join the audio conference only

To view in other time zones or languages, please click the link:  https://cornell.webex.com/cornell/globalcallin.php?serviceType=MC&ED=167096322&tollFree=1

  • No labels

All content on the LYRASIS Wiki is licensed under the CC BY (Attribution) license, unless otherwise noted.