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Dates: April 23 - May 4

TEAM:

  1. Muhammad Javed (Cornell)
  2. Mike Conlon (VIVO)
  3. Jim Blake (Cornell)
  4. Benjamin Gross (Clarivate)
  5. Marijane White (OHSU)
  6. Tatiana Walther (TIB)
  7. Kitio Fofack (UQAM)
  8. Ralph O'Flinn (UAB)
  9. Don Elsborg( CU Boulder )
  10. Christian Hauschke (TIB)

Tasks

Re-evaluation of 1.10 branch. (Testing) 

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    1. Create a new release candidate

    2. We will be testing vivo-ontology-lab pull request. https://github.com/vivo-project/VIVO/pull/63

    3. Is it good to go in production?

    4. Preparing documentation for release (LEAD - Mike)
    5. Team: Mike Conlon (VIVO) Muhammad Javed (Cornell) Benjamin Gross LEAD (Clarivate) Ralph O'Flinn (UAB), Jim Blake (Cornell), Don Elsborg ( CU Boulder )

    6. DELIVERABLES:

      1. Pull request merge in dev (and merge to master??)

      2. Updated documentation following evaluation of current state of 1.10 documentation. Don Elsborg volunteered to assist as 1.7 persona. 


Elastic Search  (Proposed to move to Sprint -2)

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  1. Decompose the task into smaller sections and focus on what can be achieved in two weeks time.

  2. Team: Benjamin Gross (Clarivate)Jim Blake (Cornell)Don Elsborg ( CU Boulder )
  3. DELIVERABLES:
  4. 1) Discuss/analyze the Elastic search work done by individual sites.
    2) Based on 1, implement current vitro search functionality in Elastic
    3) Create instructions on how to make YOUR VIVO installation work with Elastic (on the assumption that Solr will still be the default).
    4) analyze how to build a nested json-doc that represents an object ( person, publication, grant, etc ) in the index ( both SOLR or Elastic )
    5) lay groundwork for analysis of incorporating semantics ( json-ld, other ) in the indexed document. Mapping the objects from VIVO-ISF to an indexed semantic document would need to involve the ontology group



VIVO ontology & Ontologies.owl file update

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    1. Replacing multiple vivo ontology files with a single one vivo.owl ontology task force group created.

      1. We will test if vivo.owl contains all entities (classes/properties) that exist in current VIVO software.

      2. We will test if ontologies.owl file is complete. All ontologies are mentioned in siteAdmin page. (ontologies.owl)

    2. Team: Muhammad Javed (Cornell), Mike Conlon (VIVO), Marijane White LEAD (OHSU)
    3. DELIVERABLES:
      1. A decision that changes are good to go in production or not ready (with comments)

VCARD ontology update (HomeWork)

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  1. Homework: Evaluation, what has been changed, what should be removed, what should be updated, building the VCARD ontology module file (Add/Retract).

  2. Team: Tatiana Walther LEAD (TIB), Muhammad Javed (Cornell), Mike Conlon Co-LEAD (VIVO)

  3. DELIVERABLES:

    1. A file that contains list of VCARD entities that are used in vivo software but with a second column, specifying if the entity is current, changed or is deprecated (do not exist) in the current VCARD ontology. (current/deprecated/changed).

    2. A file that contains vcard graph that should be removed from vivo.owl

    3. A file that contains vcard graph that should be added in vivo.owl.

    4. "SPARQL Construct Query" to find existing triples and to replace with new.

Preparation of ontology modules for the candidate ontologies/entities to be deleted. (Homework)

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  1. Homework: Preparing ontology module files for the candidate ontology entites to be deleted from vivo.owl

  2. Once re-organized ontology files are in place, next step is to clean ontologies/entities that do not sit well with VIVO. In this task, we will analyze.

  3. Which one of the ontologies are candidate to be removed.

  4. If removed, pull the graph out and make it available for those who would like to use It (in case).

  5. Team:Muhammad Javed LEAD (Cornell), Mike Conlon (VIVO)
  6. DELIVERABLES:

    1. Graph file(s) of the candidate ontology modules to be removed.                                             

      1. Updated vivo.owl file.

      2. Updated ontologies.owl file

Multi-Language Support

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    1. Implement this feature on Capability map as a proof of concept of this issue. A user should be able to view the capability map in the language selected switching languages should change the language in which the map is displayed. The scope include making modifications at all levels of the application including templates, Javascripts, Java code, SPARQL queries and Ontology.
    2. Team:Kitio Fofack LEAD (UQAM), Christian Hauschke (TIB)

    3. DELIVERABLES:






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